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Thursday21 September 2017

G10 – Scientific HPC Appliance

X10

 

Accelerate your research!

→ To publish more papers
→ And win the next round of Government funding

 



Faster science
– hours vs weeks
Preinstalled accelerated Apps – simply power on and start working

HPC administration support by NOVATTE – focus purely on Science

 

 

 

G10 is a scientific HPC appliance that provides the maximum performance for MD, QM and Bioinformatics apps. Modular in nature, G10 can be configured to efficiently run any mix of applications required by particular Department or School: your workflow dictates your application mix, G10 guarantees your applications are run at their respective maximum speeds. 

G10-apps

 

Molecular Dynamics:

Application

Block

Performance

Benchmark

Download benchmark

AMBER Gamma-A 23.89 ns/day/block FactorIX NVE 
taken from AMBER.org
download
NAMD Gamma-A 485 sec/block STMV with numsteps set to 5000
taken from University of Illinois at Urbana-Champaign
download
GROMACS Gamma-A 42.22 ns/day/block ADH Cubic
taken from gromacs.org
download
CHARMM Gamma-A Coming soon  Coming soon   download
LAMMPS Gamma-A 209.7 sec/block data.rhodo and in.gpu.rhodo (steps changed to 5000)
inside <LAMMPS>/examples/gpu/
comes inside LAMMPS

DL_POLY Gamma-A Coming soon   Coming soon  download

 

Quantum Mechanics:

Application

Block

Performance

Benchmark

Download benchmark

GAMESS Gamma-A Coming soon Coming soon download
NWChem Gamma-A Coming soon Coming soon download
CP2K Gamma-A Coming soon Coming soon download
Quantum
Espresso
Gamma-A Coming soon Coming soon
download 

  

Bioinformatics:

Application

Block

Performance

Benchmark

Download benchmark

Velvet Delta Coming soon Coming soon download
BWA Delta Coming soon Coming soon download
Bowtie Delta Coming soon Coming soon download
SOAP3-dp Gamma-A Coming soon Coming soon
download
ABySS Delta Coming soon Coming soon download

 

Cluster Management:
G10 comes with intuitive and easy to use Cluster Management System with GUI: it offers a single and consistent interface to all available cluster management functionalities. Is extremely easy to use even for people with limited Linux management experience.

CMS1

 

G10 Compute Blocks:

  Gamma-A Gamma-B Delta Omega
  Gamma-a

Gamma-b
Delta Omega
Ideal for Molecular Dynamics
(Moderate
GPGPUs workload)
Molecular Dynamics
(Intensive
GPGPUs workload)

Quantum Mechanics
Bioinformatics
Large memory tasks
Non-MPI tasks
Architecture CPUs + GPGPUs + IB CPUs + GPGPUs + IB CPUs + IB CPUs + IB / 10GbE
Theoretical Peak TFLOPs per block (SP) 35.9 TFlops 70.8 TFlops 3.84 TFlops  1.33 TFlops
Theoretical Peak TFLOPs per block (DP) 8.4 TFlops 15.9 TFlops 1.92 TFlops 0.66 TFlops
Memory per block  256 GB 256 GB  512 GB 1 TB

 

 

G10 Storage:

  Scratch drive Archive space
  Scratch ScratchScratch
Performance up to 3 GB/s   
Usable Capacity 3.5 TB or 7TB Vary

 

Software Stack:
G10 support the following software stack
G10 SW Stack

 

 

Architecture:

Architecture
  • Separate data, monitoring and management networks
  • Driveless nodes
Compute field
  • Intel® Xeon® processor E5 family
  • NVIDIA TESLA GPGPU accelerators
Memory
  • DDR4-2133 GHz ECC Registered
Networking/
Interconnect
  • 1GbE management network
  • 56Gb/s FDR or 100Gb/s EDR InfiniBand interconnect network
  • NVIDIA GPUDirect
File System
  • NFS
  • Lustre (optional)
Storage Systems
System Administration
  • Graphical or shell system administration and provisioning for both HPC Cluster and Lustre storage
  • Automatic interconnect, nodes and storage detection and monitoring
  • Cluster partitioning to smaller logical clusters running own software stack and own jobs
  • Automatic system software updates; rollback capabilities
  • Visual tools for comprehensive set of software and hardware metrics monitoring
  • Redundant head nodes with automated failover and load balancing
  • Integrated job schedulers
  • GPU and MIC management
  • ScaleMP management
  • Graphical monitoring and provisioning of Parallel File System, storage

JA Minisite

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